CellPathfinder Software

CellPathfinder is designed for our HCA systems, CQ1 and the CellVoyager series. From beginners to experts, the analysis software lets you quantify subtle physiological changes and even label-free samples with various graph options.

Note:
Software performance is guaranteed only if CellPathfinder Software is installed on a PC designated by Yokogawa. CellPathfinder Software can be used by customer’s own Workstation. Although it can not be guaranteed that it operates normally, so please fully check the operation with a free trial version etc. Specification of workstation recommended by Yokogawa is below:
 

Workstation

The specification of the workstation for CellPathfinder that Yokogawa offers are as follows.

Model

Dell Precision

CPU Intel Xeon
Memory 128GB
HDD System Drive (C): 4 TB  or 1 TB
Data Drive (D): 4 TB
OS Microsoft Windows10 IoT Enterprise
GPU

NVIDIA Quadro P620 or NVIDIA T400
NVIDIA Quadro RTX5000 or RTX A4500

Interface

Quadro P620: Mini DisplayPort x4 (Mini DisplayPort to DisplayPort adapter)
T400: Mini DisplayPort x3 (Mini DisplayPort to DisplayPort adapter)
Quadro RTX5000 or RTX A4500: DisplayPort x4

Monitor

Two 27 in. wide monitors, 2560 x 1440 Pixels

 

If a customer wishes to prepare your own workstation, please refer to the following.

Resource Basic Pack With Machine Learning Option With Deep Learning Option
Minimum specification*3 Recommended specification Minimum specification Recommended specification Recommended specification
CPU

Intel Xeon
(PassMark score*1 7389)
or equivalent

Intel Xeon (PassMark score*1 8479) or faster equivalent

 

GPU

NVIDIA Quadro
(PassMark score*1 2263)
or equivalent

NVIDIA Quadro (PassMark score*1 3469)
or faster equivalent

 

Quadro RTX5000 or NVIDIA RTX A4500

RAM

32GB

64GB

128GB*2
Storage

200MB of free disk space
(Data area is required separately.)

1st: 2TB 2nd :4TB

Monitor

1920 x 1080

Two 1920 x 1200 or Two 2560 x 1440

Network 1 node 10GbE 1 node
OS

Windows 10 22H2*4 64-bit or Windows 11 Pro 23H2*4 64-bit

*1 PassMark score is one of the benchmarks used to evaluate hardware performance.
*2 When analyzing tiled images using the Machine Learning option, 128 GB of memory is recommended.
*3 This specification is not recommended for automatic analysis.
*4 This is the recommended version as of May 2024.

 

Software

Please download [CellPathfinder_Installer_R3.08.01 (1.48 GB)]. To use CellPathfinder, an activation code is required.
Right-click the downloaded ZIP file and select "Properties". Select "Unblock" as shown in the figure below, click "OK", and then unzip the ZIP file.

Properties

Please install by referring to the "Software Installation Manual" [IM80K01B02-01E_012.pdf] in the unzipped folder.

For the Deep Learning option, download [CellPathfinder_Installer_R3.08.01_DeepLearning (3.7 GB)] and unzip the ZIP file with the same procedure as described above. Then install by referring to the "Installation Manual" [IM80K01B03-01E_008.pdf] in the unzipped folder.

Fill in the request sheet and send it to us by e-mail.

CellPathfinder_Installer_R3.08.01 (1.48 GB) Download 
CellPathfinder_Installer_R3.08.01_DeepLearning (3.7 GB) Download 

 

Tutorial

We prepared tutorials that explains how to use CellPathfinder in an easy-to-understand manner.

CellCycle Tutorial page 
NFkB Tutorial page 
Neurite Outgrowth Tutorial page 
Collapsed Fibers Tutorial page 
HeLa(CE Bright Field) Tutorial page 
Spheroid Tutorial page 
Angiogenesis Tutorial page 
Calcium Imaging Tutorial page 
Tracking Tutorial page 
Manual Region Specified Analysis through Tiling Tutorial page 
Dots in cells Tutorial page 

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